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Peter Attia MDPeter Attia MD

268 ‒ Genetics: testing, therapy, editing, association with disease risk, autism, and more

Watch the full episode and view show notes here: https://bit.ly/47ReyJi Become a member to receive exclusive content: https://peterattiamd.com/subscribe/ Sign up to receive Peter's email newsletter: https://peterattiamd.com/newsletter/ Wendy Chung is a board-certified clinical and molecular geneticist with more than 25 years of experience in human genetic disease research. In this episode, Wendy delves deep into the world of genetics by first exploring the historical landscape of genetics prior to decoding the human genome, contrasting it with what we know today thanks to whole genome and exome sequencing. She provides an overview of genetic testing by differentiating between various genetic tests such as direct-to-consumer, clinical, whole genome sequencing, and more. Additionally, Wendy unravels the genetic underpinnings of conditions such as PKU, breast cancer, obesity, autism, and cardiovascular disease. Finally, Wendy goes in depth on the current state and exciting potential of gene therapy while also contemplating the economic implications and ethical nature of gene editing. We discuss: 0:00:00 - Intro 0:00:38 - Wendy’s interest in genetics and work as a physician-scientist 0:03:25 - The genetics of phenylketonuria (PKU), a rare inherited disorder 0:17:28 - The evolution of genetic research: from DNA structure to whole genome sequencing 0:28:43 - Insights and surprises that came out of the Human Genome Project 0:35:09 - Overview of various types of genetic tests: direct-to-consumer, clinical, whole genome sequencing, and more 0:40:50 - Whole genome sequencing 0:46:59 - Germline mutations and the implications for older parents 0:52:31 - Whole exome sequencing and the importance of read depth 0:56:21 - Genetic testing for breast cancer 1:04:12 - What information does direct-to-consumer testing provide (from companies like 23andMe and Ancestry.com)? 1:09:42 - The GUARDIAN study and newborn genetic screening 1:21:57 - Treating genetic disease with gene therapy 1:26:28 - How gene therapy works, and the tragic story of Jesse Gelsinger 1:33:05 - Use cases for gene therapy, gene addition vs. gene editing, CRISPR, and more 1:43:03 - Two distinct gene editing strategies for addressing Tay-Sachs and fragile X syndrome 1:47:40 - Exploring obesity as a polygenic disease: heritability, epigenetics, and more 1:55:55 - The genetics of autism 2:10:24 - The genetics of cardiovascular disease 2:15:28 - The financial costs and economic considerations of gene therapy 2:21:37 - The ethics of gene editing 2:31:55 - The future of clinical genetics -------- About: The Peter Attia Drive is a deep-dive podcast focusing on maximizing longevity, and all that goes into that from physical to cognitive to emotional health. With over 70 million episodes downloaded, it features topics including exercise, nutritional biochemistry, cardiovascular disease, Alzheimer’s disease, cancer, mental health, and much more. Peter Attia is the founder of Early Medical, a medical practice that applies the principles of Medicine 3.0 to patients with the goal of lengthening their lifespan and simultaneously improving their healthspan. Learn more: https://peterattiamd.com Connect with Peter on: Facebook: http://bit.ly/PeterAttiaMDFB Twitter: http://bit.ly/PeterAttiaMDTW Instagram: http://bit.ly/PeterAttiaMDIG Subscribe to The Drive: Apple Podcast: http://bit.ly/TheDriveApplePodcasts Overcast: http://bit.ly/TheDriveOvercast Spotify: http://bit.ly/TheDriveSpotify Google Podcasts: http://bit.ly/TheDriveGoogle Disclaimer: This podcast is for general informational purposes only and does not constitute the practice of medicine, nursing, or other professional healthcare services, including the giving of medical advice. No doctor-patient relationship is formed. The use of this information and the materials linked to this podcast is at the user's own risk. The content on this podcast is not intended to be a substitute for professional medical advice, diagnosis, or treatment. Users should not disregard or delay in obtaining medical advice for any medical condition they have, and they should seek the assistance of their healthcare professionals for any such conditions. I take conflicts of interest very seriously. For all of my disclosures and the companies I invest in or advise, please visit my website where I keep an up-to-date and active list of such companies. For a full list of our registered and unregistered trademarks, trade names, and service marks, please review our Terms of Use: https://peterattiamd.com/terms-of-use/

Wendy ChungguestPeter Attiahost
Aug 28, 20232h 35mWatch on YouTube ↗

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At a glance

WHAT IT’S REALLY ABOUT

Wendy Chung on Genetic Testing, Gene Therapy, Editing, and Disease

  1. Chung explains that genetic tests differ in purpose: direct-to-consumer SNP tests like 23andMe and Ancestry are recreational or ancestry-oriented, while targeted panels, exomes and whole genomes answer medical questions with varying depth.
  2. She describes the GUARDIAN study, which sequences genes from newborn dried blood spots to screen for treatable rare diseases, with about 74% of approached parents opting in and a cost of roughly $1,000 per baby that she hopes to cut to $100.
  3. The conversation covers how gene therapy works, including the Jesse Gelsinger tragedy, viral vector immune risks, gene addition versus gene editing, and CRISPR's off-target limitations.
  4. Chung and Attia compare the genetic architecture of complex conditions, noting obesity heritability around 0.5, autism around 0.8 to 0.9 with hundreds of implicated genes, and cardiovascular disease where therapies may target a final common pathway such as PCSK9.
  5. They close on cost and ethics, covering $1–3 million gene therapies, the scientific consensus against germline editing and enhancement, and Chung's cautious outlook that diagnosis will become trivial by 2040 while therapeutic reach is uncertain.

IDEAS WORTH REMEMBERING

5 ideas

Not all genetic tests serve the same purpose

Chung says 23andMe and Ancestry read selected SNPs for ancestry and recreational traits, so a clean result is not an all-clear for health. Medical tests are targeted to a specific question, and she advises a second opinion before irreversible decisions like a mastectomy.

Read depth guards against sequencing errors

Short reads of about 100 base pairs are error-prone, so each position is sequenced many times, typically around 30X. For somatic cancer mutations present in few cells, depth can reach 1,000X.

Newborn genomic screening can add to traditional screening

GUARDIAN pairs DNA sequencing with the dried blood spot already used for PKU, and it caught a baby with severe combined immunodeficiency that traditional screening missed. Chung notes children with these conditions are often not diagnosed until around eight to ten years old otherwise.

Gene therapy is promising but still in its infancy

Only a handful of conditions, such as SMA, have approved gene therapies, and immune responses to viral vectors remain a risk. Chung notes that some conditions, like Wilson disease, are treated cheaply with zinc once diagnosed early.

Different diseases need different genetic strategies

Recessive loss-of-function conditions like Tay-Sachs suit gene addition, while sickle cell and fragile X (a repeat expansion) call for gene editing. Delivery to the brain and the timing window of treatability are major hurdles.

WORDS WORTH SAVING

5 quotes

I often tell people, you know, the first gene that I cloned took eight years, um, and you know, the last gene I cloned took eight hours. So, you know, this is just absolutely astronomically different in terms of how we now find disease genes.

— Wendy Chung

So although gene therapy is wonderful, I want to underscore we don't always need gene therapy, so long as we have that early diagnosis.

— Wendy Chung

We're all ninety-nine point nine percent the same. Um, about one in a thousand base pairs is what you and I probably differ, uh, by on average.

— Wendy Chung

I think it's very hard for me to predict timing. Um, and I think Bill Gates is, has a quote similar to this. You know, I do think within some point in the next hundred years we'll get to this point, whether it's the next twenty years or not

— Wendy Chung

It doesn't take much in society and in science to get us stuck.

— Wendy Chung

PKU and newborn screeningGenetic testing types and limitsWhole genome vs exome sequencing and read depthGUARDIAN newborn genomic screeningGene therapy, vectors and CRISPRGenetics of obesity, autism and heart diseaseCost and ethics of gene editing

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